superexacttestpy.pl.plot
- superexacttestpy.pl.plot(data, n, name, degree=-1, sort_by='degree', show_count=True, orientation='horizontal', color_p_val=True, size=(10, 5), background_color='seaborn-notebook', vmax=None)
Plot the results of the superexact test
- Parameters:
- data : list
List of data to compute with superexact test
- n : int
Background size
- name : list
List of names of each set
- degree : int
Intersection degree
- sort_by : str
Sort the results by “degree” or “cardinality”
- show_count : bool
Show the number of genes in each set
- orientation : str
Orientation of the plot. “horizontal” or “vertical”
- color_p_val : bool
Color the bars by their p-value
- size : tuple
Size of the plot
- background_color : str
Background color of the plot. Default = “seaborn-notebook” other possibility : see
style.availablefor list of available styles
- Returns:
df – Dataframe with the results of the superexact test
- Return type:
pd.DataFrame
Example
>>> plot(data, n, name, degree=-1, sort_by="degree", show_count=True, orientation="horizontal", color_p_val=True, size=(10,5), background_color="dark_background") ... None